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CLAMP Resources

Download the source code and datasets of CLAMP. These resources will help you implement and explore our methodology for predicting specific protein-mediated chromatin loops in diverse species.

Please note that once the peer-review process is completed, all download links will be activated.

Source Code

Complete source code of CLAMP including all modules and components for model training and inference.

  • Core prediction algorithm
  • Pre-trained models
  • Utility scripts and tools
  • Documentation and examples
GitHub Repository

Datasets

Complete datasets used for training, validation, and testing of the CLAMP model.

  • Training data across multiple species
  • Benchmark datasets for evaluation
  • Processed chromatin accessibility data
Please note that once the peer-review process is completed, all download links will be activated.

Pre-trained Models

Ready-to-use pre-trained models for different species and experimental conditions.

  • Pre-trained CLAMP model
  • Protein-specific fine-tuned CLAMP model
  • Model weights and configuration files
Download Models

Citation

If you use CLAMP in your research, please cite our paper:

Author et al. (2025). CLAMP: Predicting Specific Protein-Mediated Chromatin Loops in Diverse Species with a Language Model of Chromatin Accessibility. Journal Name. doi: 10.xxxx/xxxxx

For questions about downloading or using these resources, please contact us or raise an issue on our GitHub repository once it's available.