Embedding Analysis

CLAMP: Predicting Specific Protein-Mediated Chromatin Loops in Diverse Species with a Language Model of Chromatin Accessibility
About This Tool

This tool allows you to generate high-quality embeddings for DNA sequences using our pretrained model. The embeddings can be used for various downstream tasks such as classification, clustering, and sequence analysis.

Due to limited online server resources, CLAMP+ only provides 500bp-4mer pretrained CLAMP model and supports up to 3 DNA sequences per submission. If you need to use models with more parameters, please deploy 1500bp-6mer CLAMP model on your server/cluster.

According to our test, the anlysis time is about 15 seconds per sequence.

Supported file format: FASTA (.fa, .fasta)

We will notify you once your job is completed.

Example Result
Need Help?

If you encounter any issues or have questions about using this tool, please refer to our documentation or contact our support team.